Output files and folders description for the MatchSchemas module ================================================================ :: **OutputFolderName** The folder where the output files are stored. blast_processing Folder containing BLASTp database, BLASTp output files, master file, self-score folder, and translation files. subject_reps_vs_reps_blastdb Folder containing the BLASTp database for the rep vs rep analysis. subject_reps_vs_reps_blastdb.pdb Position-specific Data Base file. Contains position-specific scoring matrices (PSSMs) used in PSI-BLAST searches. subject_reps_vs_reps_blastdb.phr Protein Header Record file. Contains the header information for each sequence in the protein database. subject_reps_vs_reps_blastdb.pin Protein Index file. Contains the index of the sequences in the protein database. subject_reps_vs_reps_blastdb.pog Protein Organism Group file. Contains information about the taxonomic grouping of the sequences in the protein database. subject_reps_vs_reps_blastdb.pos Protein Organism Sequence file. Contains the actual sequence data for the protein database. subject_reps_vs_reps_blastdb.pot Protein Organism Taxonomy file. Contains taxonomic information for the sequences in the protein database. subject_reps_vs_reps_blastdb.psq Protein Sequence Query file. Contains the sequence data in a format optimized for BLAST searches. subject_reps_vs_reps_blastdb.ptf Protein Taxonomy File. Contains taxonomy information for the sequences in the protein database. subject_reps_vs_reps_blastdb.pto Protein Taxonomy Organism file. Contains organism-specific taxonomy information for the sequences in the protein database. subject_reps_vs_alleles_blastdb Folder containing the BLASTp database for the rep vs rep analysis. subject_reps_vs_alleles_blastdb.pdb Position-specific Data Base file. Contains position-specific scoring matrices (PSSMs) used in PSI-BLAST searches. subject_reps_vs_alleles_blastdb.phr Protein Header Record file. Contains the header information for each sequence in the protein database. subject_reps_vs_alleles_blastdb.pin Protein Index file. Contains the index of the sequences in the protein database. subject_reps_vs_alleles_blastdb.pog Protein Organism Group file. Contains information about the taxonomic grouping of the sequences in the protein database. subject_reps_vs_alleles_blastdb.pos Protein Organism Sequence file. Contains the actual sequence data for the protein database. subject_reps_vs_alleles_blastdb.pot Protein Organism Taxonomy file. Contains taxonomic information for the sequences in the protein database. subject_reps_vs_alleles_blastdb.psq Protein Sequence Query file. Contains the sequence data in a format optimized for BLAST searches. subject_reps_vs_alleles_blastdb.ptf Protein Taxonomy File. Contains taxonomy information for the sequences in the protein database. subject_reps_vs_alleles_blastdb.pto Protein Taxonomy Organism file. Contains organism-specific taxonomy information for the sequences in the protein database. blastp_results Folder containing the BLASTp output files. blast_results_x.tsv TSV file containing the BLASTp results for the locus x. blast_results_y.tsv TSV file containing the BLASTp results for the locus y. blast_results_z.tsv TSV file containing the BLASTp results for the locus z. ... All the other TSV BLASTp results files. Query_Translation Folder containing the query translation files. query_translations_x.fasta FASTA file containing the translation for the locus x. query_translations_y.fasta FASTA file containing the translation for the locus y. query_translations_z.fasta FASTA file containing the translation for the locus z. ... All the other translation files. Query_Translation_Rep Folder containing the representative query translation files. query_translations_x.fasta FASTA file containing the translation for the locus x. query_translations_y.fasta FASTA file containing the translation for the locus y. query_translations_z.fasta FASTA file containing the translation for the locus z. ... All the other translation files. Subject_Translation Folder containing the subject translation files. subject_translations_x.fasta FASTA file containing the translation for the locus x. subject_translations_y.fasta FASTA file containing the translation for the locus y. subject_translations_z.fasta FASTA file containing the translation for the locus z. ... All the other translation files. Subject_Translation_Rep Folder containing the representative subject translation files. subject_translations_x.fasta FASTA file containing the translation for the locus x. subject_translations_y.fasta FASTA file containing the translation for the locus y. subject_translations_z.fasta FASTA file containing the translation for the locus z. ... All the other translation files. self_score_folder Folder containing the self-score BLAST results. blast_results_x.tsv TSV file containing the BLASTp results for self-score for the locus x. blast_results_y.tsv TSV file containing the BLASTp results for self-score for the locus y. blast_results_z.tsv TSV file containing the BLASTp results for the locus z. ... All the other TSV BLASTp for self-score results files. **hashes_dna_matches.tsv** TSV file with the matches from the DNA hashes analysis. **hashes_prot_matches.tsv** TSV file with the matches from the proteins hashes analysis. **reps_vs_reps_matches.tsv** TSV file with the matches from the reps vs reps Blastp analysis. **reps_vs_alleles_matches.tsv** TSV file with the matches from the reps vs alleles Blastp analysis. **unmatched.tsv** TSV file with the loci that were not matched analysis. **Match_Schemas_Results.tsv** TSV file containing the best BLAST matches for the query and subject schemas sorted by locus name. Also contains the final non-matched locus from both Query and Subject.