Output files and folders description for the CreateSchemaStructure module

**OutputFolderName**
    The folder where the output files are stored.

**schema**
    The folder where the final created schema will be stored.

    **x.fasta**
        The fasta file containing the loci.

    **y.fasta**
        The fasta file containing the loci.

    **z.fasta**
        The fasta file containing the loci.

    **...**
        Other fasta files containing the loci.

    **short**
        The folder containing the short loci.

        **x_short.fasta**
            The short fasta file containing the loci.

        **y_short.fasta**
            The short fasta file containing the loci.

        **z_short.fasta**
            The short fasta file containing the loci.

        **...**
            Other short fasta files containing the loci.

**temp_fasta**
    Folder where the temporary fasta files (already altered but not structured) will be stored.

    **x.fasta**
        The fasta file containing the loci.

    **y.fasta**
        The fasta file containing the loci.

    **z.fasta**
        The fasta file containing the loci.

    **...**
        Other fasta files containing the loci.

**schema_invalid_alleles.txt**
    List of all the identifiers of the alleles that were excluded and the reason for the exclusion of each allele.
    If none is found then the file is empty.

** schema_invalid_loci.txt**
    List of genes that had no valid alleles, one gene identifier per line.

** schema_summary_stats.tsv**
    Summary statistics for each gene (number of alleles in the external schema, number of valid alleles included in the adapted schema and number of representative alleles chosen by chewBBACA).