**OutputFolderName**
The folder where the output files are stored.
**assemblies_ncbi.zip**
Zip file containing all the assemblies and extra information that the user wants to be downloaded from NCBI.
**ena661k_assemblies**
Folder containing the assemblies downloaded from ENA661K.
**x.contigs.fa.gz**
Gzipped FASTA file containing the contigs for the assembly x.
**y.contigs.fa.gz**
Gzipped FASTA file containing the contigs for the assembly y.
**z.contigs.fa.gz**
Gzipped FASTA file containing the contigs for the assembly z.
**...**
Other gzipped FASTA files for the assemblies.
**metadata_all**
Folder containing all the metadata downloaded from NCBI and ENA661K.
**biosamples_ids.tsv**
TSV file containing the BioSample IDs for the assemblies.
**id_matches.tsv**
TSV file containing the matches between the BioSample IDs and the assembly IDs and SRA IDs.
**all_ids_fetched.tsv**
TSV file containing all the IDs fetched during the download process.